To evaluate the facilities of the web application different test files are available. The available testfiles are listed below. |
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Affymetrix GeneChip test files |
T-ALL-2-0h.CEL | T-ALL (acute lymphoblastic leukemia) patient, sample taken before treatment. |
T-ALL-2-8h.CEL | T-ALL patient 2, treated for 8 hours with GC (glucocorticoids). |
T-ALL-20-0h.CEL | T-ALL patient 20 before treatment. |
T-ALL-20-20h.CEL | T-ALL patient 20 after 8 hours GC treatment |
T-ALL-25-0h.CEL | T-ALL patient 25 before treatment. |
T-ALL-25-6h.CEL | T-ALL patient 25 after 6 hours GC treatment. |
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Two color microarray test files |
The two color microarrays were scanned with a Axon scanner using the GenePix software. The corresponding GAL (gene array list) file is Batch08_modUG.gal. |
No026004.gpr | RNA from a GC sensitive T-ALL cell line (CEM-C7H2) after 6 hours GC treatment (red signal channel) and RNA from the same cell line without treatment (green signal channel). |
No026005.gpr | The same RNA was hybridized as on array No026004.gpr, but the RNA was labeled using nucleotid labeling, not using the cy-scribe direct labeling protocol. |
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GO analysis test file |
The test file GOanalysis.txt can be used to perform a GO analysis. The column containing the LocusLink (Gene) identifiers is called LocusLink. The Affymetrix GeneChip hgu133plus2 was used to perform the analysis. |
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ABI microarray testfile |
The ABI (Applied Biosystems) microarray test file ABIdata-mod2.txt contains the expression values of 6 ABI microarrays. |
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